J3_8QOA_019
3D structure
- PDB id
- 8QOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SecM-stalled Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8QOA|1|A|C|48, 8QOA|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QOA_019 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0705
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QOA|1|A|G|46
8QOA|1|A|C|47
8QOA|1|A|C|48
8QOA|1|A|U|49
8QOA|1|A|A|50
8QOA|1|A|A|51
8QOA|1|A|C|52
*
8QOA|1|A|G|359
8QOA|1|A|G|360
8QOA|1|A|G|361
8QOA|1|A|G|362
8QOA|1|A|A|363
8QOA|1|A|A|364
8QOA|1|A|U|365
8QOA|1|A|A|366
8QOA|1|A|U|367
*
8QOA|1|A|A|393
8QOA|1|A|G|394
8QOA|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- 30S ribosomal protein S16
Coloring options: