J3_8QOI_014
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 8QOI|1|S2|A|1679
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QOI_014 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1059
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|S2|C|1218
8QOI|1|S2|C|1219
8QOI|1|S2|A|1220
8QOI|1|S2|G|1221
*
8QOI|1|S2|C|1645
8QOI|1|S2|C|1646
8QOI|1|S2|A|1647
8QOI|1|S2|G|1648
8QOI|1|S2|U|1649
8QOI|1|S2|A|1650
8QOI|1|S2|A|1651
*
8QOI|1|S2|U|1673
8QOI|1|S2|G|1674
8QOI|1|S2|A|1675
8QOI|1|S2|U|1676
8QOI|1|S2|U|1677
8QOI|1|S2|A2M|1678
8QOI|1|S2|A|1679
8QOI|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain Sc
- 40S ribosomal protein S28
Coloring options: