J3_8QOI_046
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- (OMC)CGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8QOI|1|S2|G|1274, 8QOI|1|S2|G|1507, 8QOI|1|S2|U|1509
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QOI_046 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1258
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|S2|OMC|1272
8QOI|1|S2|C|1273
8QOI|1|S2|G|1274
8QOI|1|S2|G|1275
8QOI|1|S2|A|1276
8QOI|1|S2|C|1277
*
8QOI|1|S2|G|1320
8QOI|1|S2|G|1321
8QOI|1|S2|G|1322
8QOI|1|S2|U|1323
8QOI|1|S2|G|1324
*
8QOI|1|S2|U|1504
8QOI|1|S2|U|1505
8QOI|1|S2|A|1506
8QOI|1|S2|G|1507
8QOI|1|S2|A|1508
8QOI|1|S2|U|1509
8QOI|1|S2|G|1510
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
Coloring options: