J3_8QPP_032

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8QPP|1|X|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QPP_032 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.3058

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8QPP|1|X|C|272
8QPP|1|X|A|273
8QPP|1|X|A|274
8QPP|1|X|A|275
8QPP|1|X|C|276
*
8QPP|1|X|G|295
8QPP|1|X|G|296
8QPP|1|X|G|297
8QPP|1|X|U|298
8QPP|1|X|U|299
8QPP|1|X|G|300
8QPP|1|X|U|301
8QPP|1|X|A|302
*
8QPP|1|X|U|416
8QPP|1|X|G|417

Current chains

Chain X

23S ribosomal RNA

Nearby chains