3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UUGAAAAG*CG*CA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8QYX_004 not in the Motif Atlas
Geometric match to J3_5TBW_002
Geometric discrepancy: 0.0902
The information below is about J3_5TBW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

8QYX|1|A2|U|380
8QYX|1|A2|U|381
8QYX|1|A2|G|382
8QYX|1|A2|A|383
8QYX|1|A2|A|384
8QYX|1|A2|A|385
8QYX|1|A2|A|386
8QYX|1|A2|G|387
*
8QYX|1|A2|C|414
8QYX|1|A2|G|415
*
8QYX|1|C2|C|19
8QYX|1|C2|A|20

Current chains

Chain A2
28S rRNA
Chain C2
5.8S rRNA

Nearby chains

Chain F2
60S ribosomal protein L4
Chain S1
60S ribosomal protein L26
Chain f1
60S ribosomal protein L39

Coloring options:


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