3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UU*AGAAG*CGUGGA
Length
13 nucleotides
Bulged bases
8QYX|1|A2|A|1805, 8QYX|1|A2|U|1834
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8QYX_010 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.4212
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_84137.1
Basepair signature
cWW-cWW-cHW-F-cSS-F-cWW
Number of instances in this motif group
4

Unit IDs

8QYX|1|A2|U|1726
8QYX|1|A2|U|1727
*
8QYX|1|A2|A|1802
8QYX|1|A2|G|1803
8QYX|1|A2|A|1804
8QYX|1|A2|A|1805
8QYX|1|A2|G|1806
*
8QYX|1|A2|C|1832
8QYX|1|A2|G|1833
8QYX|1|A2|U|1834
8QYX|1|A2|G|1835
8QYX|1|A2|G|1836
8QYX|1|A2|A|1837

Current chains

Chain A2
28S rRNA

Nearby chains

Chain A1
Large ribosomal subunit protein uL30
Chain B2
5S ribosomal RNA; 5S rRNA
Chain N1
60S ribosomal protein L21
Chain V1
60S ribosomal protein L29

Coloring options:


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