J3_8QYX_015

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8QYX|1|A2|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|A|2551
8QYX|1|A2|G|2552
8QYX|1|A2|A|2553
8QYX|1|A2|U|2554
8QYX|1|A2|G|2555
*
8QYX|1|A2|C|2572
8QYX|1|A2|A|2573
8QYX|1|A2|G|2574
8QYX|1|A2|U|2575
*
8QYX|1|A2|A|2757
8QYX|1|A2|G|2758
8QYX|1|A2|G|2759
8QYX|1|A2|G|2760
8QYX|1|A2|U|2761
8QYX|1|A2|G|2762
8QYX|1|A2|U|2763
8QYX|1|A2|A|2764
8QYX|1|A2|A|2765
8QYX|1|A2|A|2766
8QYX|1|A2|U|2767

Current chains

Chain A2

28S rRNA

Nearby chains

Chain T1

60S ribosomal protein L27