J3_8QYX_017

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QYX_017 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1073

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8QYX|1|A2|A|2598
8QYX|1|A2|G|2599
8QYX|1|A2|A|2600
8QYX|1|A2|A|2601
8QYX|1|A2|G|2602
*
8QYX|1|A2|C|2737
8QYX|1|A2|C|2738
*
8QYX|1|A2|G|2742
8QYX|1|A2|A|2743
8QYX|1|A2|A|2744
8QYX|1|A2|A|2745
8QYX|1|A2|A|2746
8QYX|1|A2|U|2747

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain a1

60S ribosomal protein L34

Chain j1

60S ribosomal protein L37a