J3_8QYX_018
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 8QYX|1|A2|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QYX_018 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.1263
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8QYX|1|A2|C|3937
8QYX|1|A2|G|3938
8QYX|1|A2|G|3939
*
8QYX|1|A2|C|4074
8QYX|1|A2|U|4075
8QYX|1|A2|G|4076
8QYX|1|A2|A|4077
8QYX|1|A2|C|4078
*
8QYX|1|A2|G|4168
8QYX|1|A2|G|4169
8QYX|1|A2|A|4170
8QYX|1|A2|C|4171
8QYX|1|A2|A|4172
8QYX|1|A2|G|4173
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B1
- 60S ribosomal protein L7a
- Chain D2
- Large ribosomal subunit protein uL2
- Chain H1
- 60S ribosomal protein L15
- Chain c1
- 60S ribosomal protein L36
Coloring options: