J3_8QYX_019
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8QYX|1|A2|C|4337, 8QYX|1|A2|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QYX_019 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0637
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8QYX|1|A2|OMG|4228
8QYX|1|A2|U|4229
8QYX|1|A2|C|4230
*
8QYX|1|A2|G|4331
8QYX|1|A2|C|4332
8QYX|1|A2|C|4333
8QYX|1|A2|U|4334
8QYX|1|A2|C|4335
8QYX|1|A2|A|4336
8QYX|1|A2|C|4337
8QYX|1|A2|G|4338
8QYX|1|A2|A|4339
8QYX|1|A2|U|4340
8QYX|1|A2|C|4341
8QYX|1|A2|C|4342
*
8QYX|1|A2|OMG|4370
8QYX|1|A2|G|4371
8QYX|1|A2|U|4372
8QYX|1|A2|G|4373
8QYX|1|A2|U|4374
8QYX|1|A2|C|4375
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain K1
- 60S ribosomal protein L18
- Chain N1
- 60S ribosomal protein L21
- Chain U1
- Large ribosomal subunit protein uL15
- Chain i1
- 60S ribosomal protein L36a
Coloring options: