J3_8QYX_021

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

8QYX|1|A2|A|4464, 8QYX|1|A2|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QYX_021 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.071

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8QYX|1|A2|U|4463
8QYX|1|A2|A|4464
8QYX|1|A2|U|4465
8QYX|1|A2|C|4466
*
8QYX|1|A2|G|4491
8QYX|1|A2|U|4492
8QYX|1|A2|PSU|4493
*
8QYX|1|A2|A|4507
8QYX|1|A2|C|4508
8QYX|1|A2|U|4509
8QYX|1|A2|A|4510
8QYX|1|A2|A|4511
8QYX|1|A2|U|4512
8QYX|1|A2|A|4513

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain P1

60S ribosomal protein L23