J3_8QYX_022

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8QYX|1|A2|U|4882, 8QYX|1|A2|A|4938, 8QYX|1|A2|C|4940, 8QYX|1|A2|A|4943, 8QYX|1|A2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|G|4751
8QYX|1|A2|U|4752
8QYX|1|A2|U|4753
8QYX|1|A2|G|4754
*
8QYX|1|A2|C|4879
8QYX|1|A2|C|4880
8QYX|1|A2|U|4881
8QYX|1|A2|U|4882
8QYX|1|A2|C|4883
*
8QYX|1|A2|G|4936
8QYX|1|A2|C|4937
8QYX|1|A2|A|4938
8QYX|1|A2|C|4939
8QYX|1|A2|C|4940
8QYX|1|A2|G|4941
8QYX|1|A2|C|4942
8QYX|1|A2|A|4943
8QYX|1|A2|C|4944
8QYX|1|A2|G|4945
8QYX|1|A2|U|4946
8QYX|1|A2|U|4947
8QYX|1|A2|C|4948

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I1

60S ribosomal protein L13a

Chain Z1

60S ribosomal protein L35a