J3_8R3V_031

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8R3V|1|72|A|504, 8R3V|1|72|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R3V_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0931

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8R3V|1|72|G|30
8R3V|1|72|C|31
*
8R3V|1|72|G|474
8R3V|1|72|C|475
8R3V|1|72|G|476
8R3V|1|72|A|477
8R3V|1|72|A|478
8R3V|1|72|A|479
8R3V|1|72|A|480
8R3V|1|72|G|481
8R3V|1|72|A|482
8R3V|1|72|A|483
8R3V|1|72|C|484
*
8R3V|1|72|G|496
8R3V|1|72|A|497
8R3V|1|72|G|498
8R3V|1|72|U|499
8R3V|1|72|G|500
8R3V|1|72|A|501
8R3V|1|72|A|502
8R3V|1|72|A|503
8R3V|1|72|A|504
8R3V|1|72|A|505
8R3V|1|72|G|506
8R3V|1|72|A|507
8R3V|1|72|A|508
8R3V|1|72|C|509
8R3V|1|72|C|510

Current chains

Chain 72

23S ribosomal RNA

Nearby chains