J3_8R3V_032

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8R3V|1|72|U|34, 8R3V|1|72|U|448, 8R3V|1|72|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R3V_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0627

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8R3V|1|72|C|32
8R3V|1|72|C|33
8R3V|1|72|U|34
8R3V|1|72|G|35
*
8R3V|1|72|C|445
8R3V|1|72|G|446
8R3V|1|72|A|447
8R3V|1|72|U|448
8R3V|1|72|A|449
8R3V|1|72|G|450
8R3V|1|72|U|451
8R3V|1|72|G|452
8R3V|1|72|A|453
8R3V|1|72|A|454
8R3V|1|72|C|455
8R3V|1|72|C|456
8R3V|1|72|A|457
8R3V|1|72|G|458
8R3V|1|72|U|459
8R3V|1|72|A|460
8R3V|1|72|C|461
*
8R3V|1|72|G|468
8R3V|1|72|G|469
8R3V|1|72|A|470
8R3V|1|72|A|471
8R3V|1|72|A|472
8R3V|1|72|G|473

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34