J3_8R55_004
3D structure
- PDB id
- 8R55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.57 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8R55|1|A|A|985, 8R55|1|A|G|986
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8R55_004 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1417
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8R55|1|A|U|965
8R55|1|A|U|966
8R55|1|A|U|967
8R55|1|A|A|968
8R55|1|A|A|969
8R55|1|A|U|970
8R55|1|A|U|971
8R55|1|A|C|972
*
8R55|1|A|G|983
8R55|1|A|A|984
8R55|1|A|A|985
8R55|1|A|G|986
8R55|1|A|A|987
8R55|1|A|A|988
8R55|1|A|C|989
8R55|1|A|C|990
8R55|1|A|U|991
8R55|1|A|U|992
8R55|1|A|A|993
8R55|1|A|C|994
*
8R55|1|A|G|1230
8R55|1|A|G|1231
8R55|1|A|C|1232
8R55|1|A|U|1233
8R55|1|A|A|1234
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S19
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