J3_8R55_029

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R55_029 not in the Motif Atlas

Geometric match to J3_5TBW_002

Geometric discrepancy: 0.1334

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8R55|1|X|G|30
8R55|1|X|C|31
*
8R55|1|X|G|521
8R55|1|X|U|522
8R55|1|X|G|523
8R55|1|X|A|524
8R55|1|X|A|525
8R55|1|X|A|526
8R55|1|X|A|527
8R55|1|X|G|528
*
8R55|1|X|C|555
8R55|1|X|C|556

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain n

Large ribosomal subunit protein bL20

Chain r

Large ribosomal subunit protein uL22

Chain t

Large ribosomal subunit protein uL24