J3_8R8M_013

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8R8M|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R8M_013 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1199

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8R8M|1|a|C|1306
8R8M|1|a|A|1307
8R8M|1|a|A|1308
8R8M|1|a|G|1309
*
8R8M|1|a|C|1605
8R8M|1|a|C|1606
8R8M|1|a|C|1607
8R8M|1|a|A|1608
8R8M|1|a|A|1609
8R8M|1|a|A|1610
8R8M|1|a|C|1611
*
8R8M|1|a|G|1620
8R8M|1|a|U|1621
8R8M|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34