3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUA*UAG*CAUAAG
Length
12 nucleotides
Bulged bases
8R8M|1|a|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8R8M_015 not in the Motif Atlas
Homologous match to J3_5J7L_045
Geometric discrepancy: 0.0779
The information below is about J3_5J7L_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_61124.2
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8R8M|1|a|C|2295
8R8M|1|a|U|2296
8R8M|1|a|A|2297
*
8R8M|1|a|U|2321
8R8M|1|a|A|2322
8R8M|1|a|G|2323
*
8R8M|1|a|C|2332
8R8M|1|a|A|2333
8R8M|1|a|U|2334
8R8M|1|a|A|2335
8R8M|1|a|A|2336
8R8M|1|a|G|2337

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain f
Large ribosomal subunit protein uL5
Chain n
Large ribosomal subunit protein uL18
Chain v
Large ribosomal subunit protein bL27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0628 s