J3_8R8M_033

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R8M_033 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0372

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8R8M|1|a|G|1424
8R8M|1|a|G|1425
8R8M|1|a|G|1426
8R8M|1|a|A|1427
8R8M|1|a|C|1428
8R8M|1|a|G|1429
*
8R8M|1|a|C|1564
8R8M|1|a|C|1565
*
8R8M|1|a|G|1568
8R8M|1|a|A|1569
8R8M|1|a|A|1570
8R8M|1|a|A|1571
8R8M|1|a|A|1572
8R8M|1|a|G|1573
8R8M|1|a|C|1574

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2