J3_8RCS_012

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8RCS|1|A1|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCS_012 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1385

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8RCS|1|A1|C|826
8RCS|1|A1|U|827
8RCS|1|A1|U|828
8RCS|1|A1|G|829
*
8RCS|1|A1|C|857
8RCS|1|A1|G|858
8RCS|1|A1|G|859
8RCS|1|A1|A|860
8RCS|1|A1|G|861
*
8RCS|1|A1|C|868
8RCS|1|A1|G|869
8RCS|1|A1|U|870
8RCS|1|A1|U|871
8RCS|1|A1|A|872
8RCS|1|A1|A|873
8RCS|1|A1|G|874

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain H1

Small ribosomal subunit protein uS8

Chain U1

30S ribosomal protein S21