J3_8RCT_020

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8RCT|1|A1|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_020 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2167

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RCT|1|A1|C|1237
8RCT|1|A1|A|1238
8RCT|1|A1|A|1239
8RCT|1|A1|U|1240
8RCT|1|A1|G|1241
*
8RCT|1|A1|C|1296
8RCT|1|A1|G|1297
8RCT|1|A1|U|1298
8RCT|1|A1|A|1299
8RCT|1|A1|G|1300
8RCT|1|A1|U|1301
8RCT|1|A1|C|1302
8RCT|1|A1|C|1303
*
8RCT|1|A1|G|1334
8RCT|1|A1|U|1335
8RCT|1|A1|C|1336
8RCT|1|A1|G|1337

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain G1

30S ribosomal protein S7

Chain M1

Small ribosomal subunit protein uS13