J3_8RCT_052

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

8RCT|1|A2|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_052 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.0961

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RCT|1|A2|C|586
8RCT|1|A2|G|587
8RCT|1|A2|G|588
*
8RCT|1|A2|C|651
8RCT|1|A2|U|652
8RCT|1|A2|U|653
8RCT|1|A2|G|654
8RCT|1|A2|A|655
*
8RCT|1|A2|U|751
8RCT|1|A2|G|752
8RCT|1|A2|A|753
8RCT|1|A2|C|754
8RCT|1|A2|G|755

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain H2

Small ribosomal subunit protein uS8

Chain L2

Small ribosomal subunit protein uS12

Chain O2

30S ribosomal protein S15

Chain Q2

Small ribosomal subunit protein uS17