J3_8RD8_005

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAG*CCUAAAC*GUG

Length

14 nucleotides

Bulged bases

8RD8|1|Z2|U|1595, 8RD8|1|Z2|A|1597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RD8_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2065

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RD8|1|Z2|C|1290
8RD8|1|Z2|A|1291
8RD8|1|Z2|A|1292
8RD8|1|Z2|G|1293
*
8RD8|1|Z2|C|1593
8RD8|1|Z2|C|1594
8RD8|1|Z2|U|1595
8RD8|1|Z2|A|1596
8RD8|1|Z2|A|1597
8RD8|1|Z2|A|1598
8RD8|1|Z2|C|1599
*
8RD8|1|Z2|G|1608
8RD8|1|Z2|U|1609
8RD8|1|Z2|G|1610

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34