J3_8RD8_008
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_008 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.1403
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RD8|1|Z2|C|2278
8RD8|1|Z2|U|2279
8RD8|1|Z2|C|2280
*
8RD8|1|Z2|G|2304
8RD8|1|Z2|A|2305
8RD8|1|Z2|G|2306
*
8RD8|1|Z2|C|2315
8RD8|1|Z2|A|2316
8RD8|1|Z2|A|2317
8RD8|1|Z2|A|2318
8RD8|1|Z2|A|2319
8RD8|1|Z2|G|2320
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain D8
- 5S ribosomal RNA; 5S rRNA
- Chain F7
- Large ribosomal subunit protein uL5
- Chain Nc
- Large ribosomal subunit protein uL18
- Chain VH
- Large ribosomal subunit protein bL27
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