J3_8RD8_012
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_012 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0829
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RD8|1|iN|U|987
8RD8|1|iN|G|988
8RD8|1|iN|G|989
8RD8|1|iN|A|990
*
8RD8|1|iN|U|1280
8RD8|1|iN|A|1281
8RD8|1|iN|C|1282
*
8RD8|1|iN|G|1382
8RD8|1|iN|G|1383
8RD8|1|iN|A|1384
8RD8|1|iN|A|1385
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S30
- Chain F
- Small ribosomal subunit protein uS9
- Chain MM
- Small ribosomal subunit protein uS13
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