J3_8RD8_018

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUAG

Length

17 nucleotides

Bulged bases

8RD8|1|iN|U|1285, 8RD8|1|iN|C|1347

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RD8_018 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2266

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RD8|1|iN|C|1282
8RD8|1|iN|A|1283
8RD8|1|iN|A|1284
8RD8|1|iN|U|1285
8RD8|1|iN|G|1286
*
8RD8|1|iN|C|1341
8RD8|1|iN|G|1342
8RD8|1|iN|U|1343
8RD8|1|iN|A|1344
8RD8|1|iN|G|1345
8RD8|1|iN|U|1346
8RD8|1|iN|C|1347
8RD8|1|iN|C|1348
*
8RD8|1|iN|G|1379
8RD8|1|iN|U|1380
8RD8|1|iN|A|1381
8RD8|1|iN|G|1382

Current chains

Chain iN

16S rRNA

Nearby chains

Chain GS

Small ribosomal subunit protein uS7

Chain MM

Small ribosomal subunit protein uS13