J3_8RD8_029
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8RD8|1|iN|U|95, 8RD8|1|iN|A|98
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_029 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0515
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|iN|G|93
8RD8|1|iN|C|94
8RD8|1|iN|U|95
8RD8|1|iN|U|96
8RD8|1|iN|A|97
8RD8|1|iN|A|98
8RD8|1|iN|C|99
*
8RD8|1|iN|G|402
8RD8|1|iN|G|403
8RD8|1|iN|G|404
8RD8|1|iN|G|405
8RD8|1|iN|A|406
8RD8|1|iN|A|407
8RD8|1|iN|U|408
8RD8|1|iN|A|409
8RD8|1|iN|U|410
*
8RD8|1|iN|A|436
8RD8|1|iN|G|437
8RD8|1|iN|C|438
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain H
- Elongation factor Tu
- Chain L6
- Small ribosomal subunit protein uS12
- Chain Pj
- Small ribosomal subunit protein bS16
Coloring options: