J3_8RD8_033

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8RD8|1|iN|C|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RD8_033 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1343

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8RD8|1|iN|C|1034
8RD8|1|iN|U|1035
8RD8|1|iN|U|1036
8RD8|1|iN|G|1037
8RD8|1|iN|A|1038
8RD8|1|iN|C|1039
8RD8|1|iN|A|1040
8RD8|1|iN|U|1041
*
8RD8|1|iN|A|1088
8RD8|1|iN|C|1089
8RD8|1|iN|A|1090
8RD8|1|iN|G|1091
*
8RD8|1|iN|C|1255
8RD8|1|iN|U|1256
8RD8|1|iN|U|1257
8RD8|1|iN|A|1258
8RD8|1|iN|C|1259
8RD8|1|iN|G|1260

Current chains

Chain iN

16S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14