J3_8RDV_003

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_003 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1299

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|G|1039
8RDV|1|Z2|G|1040
8RDV|1|Z2|A|1041
*
8RDV|1|Z2|U|1065
8RDV|1|Z2|U|1066
8RDV|1|Z2|U|1067
8RDV|1|Z2|A|1068
8RDV|1|Z2|A|1069
8RDV|1|Z2|A|1070
8RDV|1|Z2|G|1071
*
8RDV|1|Z2|C|1086
8RDV|1|Z2|A|1087
8RDV|1|Z2|C|1088

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain ep

Large ribosomal subunit protein bL36