J3_8RDV_007
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUG*CUAAC*GGACAA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_007 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.068
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RDV|1|Z2|U|2077
8RDV|1|Z2|U|2078
8RDV|1|Z2|G|2079
*
8RDV|1|Z2|C|2182
8RDV|1|Z2|U|2183
8RDV|1|Z2|A|2184
8RDV|1|Z2|A|2185
8RDV|1|Z2|C|2186
*
8RDV|1|Z2|G|2206
8RDV|1|Z2|G|2207
8RDV|1|Z2|A|2208
8RDV|1|Z2|C|2209
8RDV|1|Z2|A|2210
8RDV|1|Z2|A|2211
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain C1
- Large ribosomal subunit protein bL9
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain WD
- Large ribosomal subunit protein bL28
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