J3_8RDV_013
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8RDV|1|iN|A|1019, 8RDV|1|iN|G|1020
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_013 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0817
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|iN|U|999
8RDV|1|iN|U|1000
8RDV|1|iN|U|1001
8RDV|1|iN|A|1002
8RDV|1|iN|A|1003
8RDV|1|iN|U|1004
8RDV|1|iN|U|1005
8RDV|1|iN|C|1006
*
8RDV|1|iN|G|1017
8RDV|1|iN|A|1018
8RDV|1|iN|A|1019
8RDV|1|iN|G|1020
8RDV|1|iN|A|1021
8RDV|1|iN|A|1022
8RDV|1|iN|C|1023
8RDV|1|iN|C|1024
8RDV|1|iN|U|1025
8RDV|1|iN|U|1026
8RDV|1|iN|A|1027
8RDV|1|iN|C|1028
*
8RDV|1|iN|G|1266
8RDV|1|iN|G|1267
8RDV|1|iN|C|1268
8RDV|1|iN|U|1269
8RDV|1|iN|A|1270
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
- Chain MM
- Small ribosomal subunit protein uS13
- Chain SP
- Small ribosomal subunit protein uS19
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