J3_8RDV_018

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUAG

Length

17 nucleotides

Bulged bases

8RDV|1|iN|U|1285, 8RDV|1|iN|C|1347

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_018 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1472

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|C|1282
8RDV|1|iN|A|1283
8RDV|1|iN|A|1284
8RDV|1|iN|U|1285
8RDV|1|iN|G|1286
*
8RDV|1|iN|C|1341
8RDV|1|iN|G|1342
8RDV|1|iN|U|1343
8RDV|1|iN|A|1344
8RDV|1|iN|G|1345
8RDV|1|iN|U|1346
8RDV|1|iN|C|1347
8RDV|1|iN|C|1348
*
8RDV|1|iN|G|1379
8RDV|1|iN|U|1380
8RDV|1|iN|A|1381
8RDV|1|iN|G|1382

Current chains

Chain iN

16S rRNA

Nearby chains

Chain GS

Small ribosomal subunit protein uS7

Chain MM

Small ribosomal subunit protein uS13