J3_8RDV_020

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_020 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0585

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|G|37
8RDV|1|Z2|C|38
*
8RDV|1|Z2|G|457
8RDV|1|Z2|C|458
8RDV|1|Z2|G|459
8RDV|1|Z2|A|460
8RDV|1|Z2|A|461
8RDV|1|Z2|A|462
8RDV|1|Z2|A|463
8RDV|1|Z2|G|464
*
8RDV|1|Z2|C|492
8RDV|1|Z2|C|493

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain PO

Large ribosomal subunit protein bL20

Chain TI

Large ribosomal subunit protein uL24