J3_8RDV_024
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAAC*GACCGUAGUA*UGUAU
- Length
- 20 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|308, 8RDV|1|Z2|U|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_024 not in the Motif Atlas
- Homologous match to J3_4WF9_015
- Geometric discrepancy: 0.4852
- The information below is about J3_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|Z2|A|284
8RDV|1|Z2|G|285
8RDV|1|Z2|A|286
8RDV|1|Z2|A|287
8RDV|1|Z2|C|288
*
8RDV|1|Z2|G|303
8RDV|1|Z2|A|304
8RDV|1|Z2|C|305
8RDV|1|Z2|C|306
8RDV|1|Z2|G|307
8RDV|1|Z2|U|308
8RDV|1|Z2|A|309
8RDV|1|Z2|G|310
8RDV|1|Z2|U|311
8RDV|1|Z2|A|312
*
8RDV|1|Z2|U|324
8RDV|1|Z2|G|325
8RDV|1|Z2|U|326
8RDV|1|Z2|A|327
8RDV|1|Z2|U|328
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain TI
- Large ribosomal subunit protein uL24
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