J3_8RDV_034

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_034 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1011

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|U|1117
8RDV|1|iN|G|1118
*
8RDV|1|iN|U|1127
8RDV|1|iN|G|1128
8RDV|1|iN|U|1129
8RDV|1|iN|U|1130
*
8RDV|1|iN|G|1143
8RDV|1|iN|C|1144
8RDV|1|iN|A|1145
8RDV|1|iN|A|1146

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2

Chain E5

Small ribosomal subunit protein uS5