J3_8RDW_005

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAAG*CCUAAAC*GUG

Length

14 nucleotides

Bulged bases

8RDW|1|Z2|U|1595, 8RDW|1|Z2|A|1597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDW_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2134

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RDW|1|Z2|C|1290
8RDW|1|Z2|A|1291
8RDW|1|Z2|A|1292
8RDW|1|Z2|G|1293
*
8RDW|1|Z2|C|1593
8RDW|1|Z2|C|1594
8RDW|1|Z2|U|1595
8RDW|1|Z2|A|1596
8RDW|1|Z2|A|1597
8RDW|1|Z2|A|1598
8RDW|1|Z2|C|1599
*
8RDW|1|Z2|G|1608
8RDW|1|Z2|U|1609
8RDW|1|Z2|G|1610

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34