J3_8RDW_010

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUAG*CGCAG*CAAUAAG

Length

16 nucleotides

Bulged bases

8RDW|1|iN|U|915, 8RDW|1|iN|A|917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDW_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1297

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8RDW|1|iN|C|870
8RDW|1|iN|U|871
8RDW|1|iN|A|872
8RDW|1|iN|G|873
*
8RDW|1|iN|C|901
8RDW|1|iN|G|902
8RDW|1|iN|C|903
8RDW|1|iN|A|904
8RDW|1|iN|G|905
*
8RDW|1|iN|C|912
8RDW|1|iN|A|913
8RDW|1|iN|A|914
8RDW|1|iN|U|915
8RDW|1|iN|A|916
8RDW|1|iN|A|917
8RDW|1|iN|G|918

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2

Chain BQ

Small ribosomal subunit protein uS8

Chain NV

Small ribosomal subunit protein bS21