J3_8RDW_022
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8RDW|1|Z2|U|41, 8RDW|1|Z2|U|431, 8RDW|1|Z2|C|439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_022 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0817
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8RDW|1|Z2|C|39
8RDW|1|Z2|U|40
8RDW|1|Z2|U|41
8RDW|1|Z2|G|42
*
8RDW|1|Z2|C|428
8RDW|1|Z2|G|429
8RDW|1|Z2|A|430
8RDW|1|Z2|U|431
8RDW|1|Z2|A|432
8RDW|1|Z2|G|433
8RDW|1|Z2|U|434
8RDW|1|Z2|G|435
8RDW|1|Z2|A|436
8RDW|1|Z2|A|437
8RDW|1|Z2|C|438
8RDW|1|Z2|C|439
8RDW|1|Z2|A|440
8RDW|1|Z2|G|441
8RDW|1|Z2|U|442
8RDW|1|Z2|A|443
8RDW|1|Z2|C|444
*
8RDW|1|Z2|G|451
8RDW|1|Z2|G|452
8RDW|1|Z2|A|453
8RDW|1|Z2|A|454
8RDW|1|Z2|A|455
8RDW|1|Z2|G|456
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain E9
- Large ribosomal subunit protein uL4
- Chain PO
- Large ribosomal subunit protein bL20
- Chain Sn
- Large ribosomal subunit protein uL23
Coloring options: