J3_8RDW_029

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8RDW|1|iN|U|95, 8RDW|1|iN|A|97, 8RDW|1|iN|A|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDW_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0556

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RDW|1|iN|G|93
8RDW|1|iN|C|94
8RDW|1|iN|U|95
8RDW|1|iN|U|96
8RDW|1|iN|A|97
8RDW|1|iN|A|98
8RDW|1|iN|C|99
*
8RDW|1|iN|G|402
8RDW|1|iN|G|403
8RDW|1|iN|G|404
8RDW|1|iN|G|405
8RDW|1|iN|A|406
8RDW|1|iN|A|407
8RDW|1|iN|U|408
8RDW|1|iN|A|409
8RDW|1|iN|U|410
*
8RDW|1|iN|A|436
8RDW|1|iN|G|437
8RDW|1|iN|C|438

Current chains

Chain iN

16S rRNA

Nearby chains

Chain H

Elongation factor Tu

Chain L6

Small ribosomal subunit protein uS12

Chain Pj

Small ribosomal subunit protein bS16