J3_8RJB_006

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8RJB|1|K|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJB_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0848

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8RJB|1|K|C|2393
8RJB|1|K|G|2394
8RJB|1|K|A|2395
8RJB|1|K|A|2396
8RJB|1|K|G|2397
8RJB|1|K|U|2398
8RJB|1|K|G|2399
*
8RJB|1|K|C|2805
8RJB|1|K|A|2806
8RJB|1|K|A|2807
*
8RJB|1|K|U|2819
8RJB|1|K|C|2820
8RJB|1|K|U|2821
8RJB|1|K|G|2822

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34