J3_8RJB_012

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8RJB|1|K|A|4464, 8RJB|1|K|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJB_012 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0919

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8RJB|1|K|U|4463
8RJB|1|K|A|4464
8RJB|1|K|U|4465
8RJB|1|K|C|4466
*
8RJB|1|K|G|4491
8RJB|1|K|U|4492
8RJB|1|K|U|4493
*
8RJB|1|K|A|4507
8RJB|1|K|C|4508
8RJB|1|K|U|4509
8RJB|1|K|A|4510
8RJB|1|K|A|4511
8RJB|1|K|U|4512
8RJB|1|K|A|4513

Current chains

Chain K

28S rRNA

Nearby chains

Chain V

Ribosomal protein L23

Chain w

Ribosomal protein L3