3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CAG*CGUAG*UCCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RJC_004 not in the Motif Atlas
Homologous match to J3_8C3A_004
Geometric discrepancy: 0.1565
The information below is about J3_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.5
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8RJC|1|K|C|1546
8RJC|1|K|A|1547
8RJC|1|K|G|1548
*
8RJC|1|K|C|1580
8RJC|1|K|G|1581
8RJC|1|K|U|1582
8RJC|1|K|A|1583
8RJC|1|K|G|1584
*
8RJC|1|K|U|1609
8RJC|1|K|C|1610
8RJC|1|K|C|1611
8RJC|1|K|G|1612

Current chains

Chain K
28S rRNA

Nearby chains

Chain A
Ribosomal protein L8
Chain R
Ribosomal protein L19
Chain g
60S ribosomal protein L34
Chain p
60S ribosomal protein L37a

Coloring options:


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