3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
UU*AGAAG*CGUGGA
Length
13 nucleotides
Bulged bases
8RJC|1|K|A|1805, 8RJC|1|K|U|1834
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RJC_020 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.5208
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_09667.1
Basepair signature
cWW-cWW-F-F-cSS-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8RJC|1|K|U|1726
8RJC|1|K|U|1727
*
8RJC|1|K|A|1802
8RJC|1|K|G|1803
8RJC|1|K|A|1804
8RJC|1|K|A|1805
8RJC|1|K|G|1806
*
8RJC|1|K|C|1832
8RJC|1|K|G|1833
8RJC|1|K|U|1834
8RJC|1|K|G|1835
8RJC|1|K|G|1836
8RJC|1|K|A|1837

Current chains

Chain K
28S rRNA

Nearby chains

Chain F
Ribosomal Protein uL30
Chain T
60S ribosomal protein L21
Chain b
60S ribosomal protein L29

Coloring options:


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