J3_8RJC_020
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 8RJC|1|K|A|1805, 8RJC|1|K|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJC_020 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5208
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RJC|1|K|U|1726
8RJC|1|K|U|1727
*
8RJC|1|K|A|1802
8RJC|1|K|G|1803
8RJC|1|K|A|1804
8RJC|1|K|A|1805
8RJC|1|K|G|1806
*
8RJC|1|K|C|1832
8RJC|1|K|G|1833
8RJC|1|K|U|1834
8RJC|1|K|G|1835
8RJC|1|K|G|1836
8RJC|1|K|A|1837
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain F
- Ribosomal Protein uL30
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
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