3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
AGAUGG*CGUUCCGAAGGG*CAGCCGAU
Length
26 nucleotides
Bulged bases
8RJC|1|K|C|2470, 8RJC|1|K|A|2472, 8RJC|1|K|G|2475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RJC|1|K|A|2451
8RJC|1|K|G|2452
8RJC|1|K|A|2453
8RJC|1|K|U|2454
8RJC|1|K|G|2455
8RJC|1|K|G|2456
*
8RJC|1|K|C|2465
8RJC|1|K|G|2466
8RJC|1|K|U|2467
8RJC|1|K|U|2468
8RJC|1|K|C|2469
8RJC|1|K|C|2470
8RJC|1|K|G|2471
8RJC|1|K|A|2472
8RJC|1|K|A|2473
8RJC|1|K|G|2474
8RJC|1|K|G|2475
8RJC|1|K|G|2476
*
8RJC|1|K|C|2501
8RJC|1|K|A|2502
8RJC|1|K|G|2503
8RJC|1|K|C|2504
8RJC|1|K|C|2505
8RJC|1|K|G|2506
8RJC|1|K|A|2507
8RJC|1|K|U|2508

Current chains

Chain K
28S rRNA

Nearby chains

Chain A
Ribosomal protein L8
Chain G
60S ribosomal protein L7a
Chain N
Ribosomal protein L15
Chain X
Ribosomal_L23eN domain-containing protein
Chain j
Ribosomal protein L37
Chain v
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:

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