J3_8RJC_024

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJC_024 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1656

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8RJC|1|K|A|2598
8RJC|1|K|G|2599
8RJC|1|K|A|2600
8RJC|1|K|A|2601
8RJC|1|K|G|2602
*
8RJC|1|K|C|2737
8RJC|1|K|C|2738
*
8RJC|1|K|G|2742
8RJC|1|K|A|2743
8RJC|1|K|A|2744
8RJC|1|K|A|2745
8RJC|1|K|A|2746
8RJC|1|K|U|2747

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a