J3_8RJD_007
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8RJD|1|K|U|2788, 8RJD|1|K|A|2789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJD_007 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1325
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RJD|1|K|G|2402
8RJD|1|K|A|2403
8RJD|1|K|A|2404
8RJD|1|K|G|2405
*
8RJD|1|K|C|2785
8RJD|1|K|C|2786
8RJD|1|K|A|2787
8RJD|1|K|U|2788
8RJD|1|K|A|2789
8RJD|1|K|U|2790
8RJD|1|K|C|2791
*
8RJD|1|K|G|2800
8RJD|1|K|U|2801
8RJD|1|K|C|2802
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
Coloring options: