J3_8RJD_009

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJD_009 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.287

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8RJD|1|K|C|3937
8RJD|1|K|G|3938
8RJD|1|K|G|3939
*
8RJD|1|K|C|4074
8RJD|1|K|U|4075
8RJD|1|K|G|4076
8RJD|1|K|A|4077
8RJD|1|K|C|4078
*
8RJD|1|K|G|4168
8RJD|1|K|G|4169
8RJD|1|K|A|4170
8RJD|1|K|C|4171
8RJD|1|K|A|4172
8RJD|1|K|G|4173

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15