J3_8RPY_005

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8RPY|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPY_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1102

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RPY|1|A|C|1306
8RPY|1|A|A|1307
8RPY|1|A|A|1308
8RPY|1|A|G|1309
*
8RPY|1|A|C|1605
8RPY|1|A|C|1606
8RPY|1|A|C|1607
8RPY|1|A|A|1608
8RPY|1|A|A|1609
8RPY|1|A|A|1610
8RPY|1|A|C|1611
*
8RPY|1|A|G|1620
8RPY|1|A|U|1621
8RPY|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34