3D structure

PDB id
8RPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
2.64 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RPY_017 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.0779
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8RPY|1|A|G|1424
8RPY|1|A|G|1425
8RPY|1|A|G|1426
8RPY|1|A|A|1427
8RPY|1|A|C|1428
8RPY|1|A|G|1429
*
8RPY|1|A|C|1564
8RPY|1|A|C|1565
*
8RPY|1|A|G|1568
8RPY|1|A|A|1569
8RPY|1|A|A|1570
8RPY|1|A|A|1571
8RPY|1|A|A|1572
8RPY|1|A|G|1573
8RPY|1|A|C|1574

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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