J3_8RPZ_004

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPZ_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1222

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RPZ|1|A|C|1298
8RPZ|1|A|G|1299
8RPZ|1|A|G|1300
8RPZ|1|A|A|1301
8RPZ|1|A|A|1302
8RPZ|1|A|G|1303
*
8RPZ|1|A|C|1625
8RPZ|1|A|A|1626
8RPZ|1|A|G|1627
*
8RPZ|1|A|C|1639
8RPZ|1|A|A|1640
8RPZ|1|A|A|1641
8RPZ|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain x

Apidaecins type 88